The completion of the Human Genome
Project, sequencing of DNA and gene mapping, in 2003 laid the foundation for
in-depth gene specific disease research. Most recently, genome wide association
studies (GWAS) are being completed to uncover variations within individual
genes that may contribute to numerous diseases. GWAS scan markers through
genomes of many individuals to discover genetic variations that may be associated
with a particular disease (NIH 2013). One disease that has been widely studied
through GWAS analysis is rheumatoid arthritis (RA), an autoimmune disease that
causes severe joint inflammation, deformity, and chronic pain.
My
mother and sister both suffer from rheumatoid arthritis. It is likely that I
will also one day suffer from this autoimmune disease, as there are genetic
origins. This made me very curious to discover what these underlying genetic
mechanisms are. One recent genome wide association study meta-analysis, or
compilation of current research, was completed to examine functional mechanisms
that may underlie associations for RA. In this study, researchers were able to
examine publicly available data to discover 8 single nucleotide variations on 5
genes that are related to immune response through function (Deng 2013). The
ability to survey publicly available data to uncover the functional mechanisms
and locations of such disease associations can be a powerful tool to allow many
more people to access and analyze this GWAS data. Additionally, being able to
narrow down the specific locus, or location on a chromosome, where a mutation
is occurring will allow for better screening and potentially future
treatment/prevention of some diseases.
Another
GWAS analysis used data regarding a specific locus, CCR6, related to rheumatoid
arthritis in Japan. The researchers were able to use this data to create a
study specifically regarding this gene locus and screen study subjects for a
specific antibody and DNA sequence variation in CCR6 locus to determine risk
for development of rheumatoid arthritis. The study found that a variation in
the CCR6 gene locus was a risk factor for developing RA in females but
conversely was a protective factor against disease development in males (Teng
2012). The gender differences observed are not necessarily triggered by one
particular factor, but it was suggested that it could possibly be related to
individual environment. As environmental influence, nature vs. nurture, is
discussed in numerous fields from psychology to biochemistry, these
associations have broad impacts.
Genome
wide association studies are the next step in identifying specific individual
genetic variations and disease implications. With all the information that is
available through the Internet, it can become concerning to think about all of
the implications of a single change within your entire genome causing a
disease. One thing to remember is that although we cannot consciously control
if our DNA is replicating correctly or not, we can control many aspects of our
health. Decreasing stress, eating healthily, and exercising regularly are all
things each person can control and will not only make you feel better, but can
also potentially prevent negative modifications within your genome.
Deng F, Lei S, Zhu H, Zhang
Y, Zhang Z. 2013. Integrative analyses for functional mechanisms underlying
associations for rheumatoid arthritis. J Rheumatol. 40;1063-1068.
National Institutes of
Health (NIH). 2013. Genome Wide Association Studies. Available From: http://www.genome.gov/20019523
Teng E, Leong K, Li H, Thong
B, Koh E, Loi P, Zhao Y, Tan E. 2012. Analysis of a genome-wide association
study-linked locus (CCR6) in Asian rheumatoid arthritis. DNA and Cell Biology.
32(4):607-610.